Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015795761.1_cds_XP_016445702.1_3980
CDS Infomation

[gene=LOC107770881] [db_xref=GeneID:107770881] [protein=indole-3-acetic acid-amido synthetase GH3.6-like] [protein_id=XP_016445702.1] [location=complement(join(135101..135687,135796..136724,136869..137203))] [gbkey=CDS]
Sequence

ATGGAAAGAACTATGTCTGAGGCACCAAACAGCCCAAAGAAAGCCACTGATTGTAGTATC
GCAGAGGACAACAAGAAGGCTCTTCAGTTCATTGAGGAGGTCACAACCAATGTTGACGAG
GTCCAAAAGAGAGTTCTTGCTGAAATCCTCTCGAGGAATGCTAATGTTGAGTACTTGCAG
CGTCATAATTTCAATGGTCAAACTGATAGAGAGACATTTAAGAAAGTCATACCTGTCATT
ACCTACGAAGATATTCAGCCTGATATCAACCGTATAGCAAATGGTGATAAATCTCCAATC
TTCAGCTCTCAACCCATCTCTGAATTCTTGACAAGTTCTGGGACGTGTGGAGGGGAGAGA
AAACTGATGCCAACAATTCAGGAAGAGCTCGGGAGGAGATTACAGCTTCACGGCTTGATG
ATGTCTGTGATAAGTCAATCTGTTCCAGATTTGGAAAAGGGCAAAGGAATGTATTTCTTG
TCCATAAAGTCTGAAGCCAAGACTCCAGGAGGATTACCAGCTCGCCCTGTTTTAACAAGT
ATTTACAAGAGTCCTTATTTCAGCAACAGGCGTCTTAGCCCCTACGCAAACTACACTAGT
CCAGCTGAAACCATTCTCTGCCCAGACACTTACCAAAGCATGTATTCCCAAATGCTTTGT
GGCCTCTGCCAAAACAAAGAAGTCCTCCGGCTCGGCTCGTACTTTGCATCTGGCTTCATC
CGTGCCATTCGGTTCCTAGAAAAGCACTGGTCTCTACTTTGCAACGATATCCGAATGGGA
ACCATTAACCCCCAAATTACAGATCTGTCAGTCAGAGAGGCAGTGATGAAAATCCTCAAA
ACTGACCCAGAGTTGGCTGATTTCATCGAGGCTGAATGCAGTAAAGATTCATGGAAAGGG
ATCATCACTAGGTTGTGGCCTAATACCAAGTATGTGGATGTTATTGTAACCGGAAGCATG
TCACAGTATATACCAACCCTTGATTATTACAGCAACGGCCTCCCTCTTGTCTCTACCATG
TATGCTTCCTCAGAATGCCCCTTTGGAATCAACTTGAACCCCTTTTGTAAGTCCAGTGAA
GTCTCTTACACCCTCATTCCCACCATGGGCTATTTTGAGTTCTCACAAATTCACAGAAGC
AATGACGTCCCCAATTCTATCTCCATGTCCGAGTCGCCTAATGAGAAAGAACAGCAACAA
TTGGTCGATTTGGTTGATGTCAAGATTGGCCAGGAGTACGAGCTTGTTGTTACCACATAT
TCTGGACTCTATAGATACAGGGTGGGTGATGTGCTTCGGGTTGCTGGATACAAGAACAAC
ACACCTCAGTTCACTTTCGTTTGCCGGGAAAATGTAATCTTGAGCATTGATTCGGACAAG
ACTGATGAAGTTGAGCTACAAAATGCAGTGGAAAATGCAGTGCGCAATCTGATGCCATTT
GATGCACATGTAACCGAGTACACCAGCTATGCTGATACTGCAAACATTCCCGGCCACTAT
GTCCTATTCTGGGAGCTCAGTATAAATATCTCTACCCCAATTCCTCCTTCAGTCGTTGAA
GATTGTTGCCTCACTATTGAAGAATCTTTAGACAGCGTCTACCGCCAGGGGCGTGCATCT
GACAAATCCATCGGGCCTCTGGAAATCAGGATAGTGGAAATTGGGACTTTCGACAAGCTC
ATGGACTACTGTGTTAGCTTAGGCGCTTCCATAGACCAATACAAGACACCTCGGTGCGTG
AGATTTGCACCCCTTGTTGAGCTATTGAATTCGAGGGTCGTGTCCAGCCACTTCAGTCAA
ACATGTCCAAATTGGGTTCCTGGCCACAGGCAATGGAACAACATGAATTGA

Peptide Sequence

PEP ID

XP_016445702.1
PEP Infomation

PREDICTED: indole-3-acetic acid-amido synthetase GH3.6-like [Nicotiana tabacum]
Sequence

MERTMSEAPNSPKKATDCSIAEDNKKALQFIEEVTTNVDEVQKRVLAEILSRNANVEYLQ
RHNFNGQTDRETFKKVIPVITYEDIQPDINRIANGDKSPIFSSQPISEFLTSSGTCGGER
KLMPTIQEELGRRLQLHGLMMSVISQSVPDLEKGKGMYFLSIKSEAKTPGGLPARPVLTS
IYKSPYFSNRRLSPYANYTSPAETILCPDTYQSMYSQMLCGLCQNKEVLRLGSYFASGFI
RAIRFLEKHWSLLCNDIRMGTINPQITDLSVREAVMKILKTDPELADFIEAECSKDSWKG
IITRLWPNTKYVDVIVTGSMSQYIPTLDYYSNGLPLVSTMYASSECPFGINLNPFCKSSE
VSYTLIPTMGYFEFSQIHRSNDVPNSISMSESPNEKEQQQLVDLVDVKIGQEYELVVTTY
SGLYRYRVGDVLRVAGYKNNTPQFTFVCRENVILSIDSDKTDEVELQNAVENAVRNLMPF
DAHVTEYTSYADTANIPGHYVLFWELSINISTPIPPSVVEDCCLTIEESLDSVYRQGRAS
DKSIGPLEIRIVEIGTFDKLMDYCVSLGASIDQYKTPRCVRFAPLVELLNSRVVSSHFSQ
TCPNWVPGHRQWNNMN

Transcript Sequence

Gene sequence data has not been registered.